Transcript: RUNX2-AS1:20

Basic information

LNCipedia transcript ID: RUNX2-AS1:20 
LNCipedia gene ID: RUNX2-AS1
Location (hg38): chr6:45566003-45577597
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2243 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012183; NONHSAT112986
Alternative gene names: XLOC_005737; linc-SUPT3H


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.939 non-coding 
CPAT coding probability 26.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RUNX2-AS1:20 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SUPT3H-1:1
3.1 lnc-SUPT3H-1:1
4.0 lnc-SUPT3H-1:1
4.1 lnc-SUPT3H-1:1
5.0 lnc-SUPT3H-1:1
5.1 RUNX2-AS1:4
5.2 RUNX2-AS1:20