Transcript: RUNX2-AS1:23

Basic information

LNCipedia transcript ID: RUNX2-AS1:23 
LNCipedia gene ID: RUNX2-AS1
Location (hg38): chr6:45571719-45576770
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2503 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute
Alternative transcript names: ENST00000513698; TCONS_00011496
Alternative gene names: ENSG00000251681; XLOC_005737; linc-SUPT3H


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.939 non-coding 
CPAT coding probability 15.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RUNX2-AS1:23 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SUPT3H-1:4
3.1 lnc-SUPT3H-1:5
4.0 lnc-SUPT3H-1:5
4.1 lnc-SUPT3H-1:5
5.0 lnc-SUPT3H-1:5
5.1 RUNX2-AS1:7
5.2 RUNX2-AS1:23