Transcript: RUNX2-AS1:24

Basic information

LNCipedia transcript ID: RUNX2-AS1:24 
HGNC Gene Symbol: RUNX2-AS1    
HGNC Full Gene Name: RUNX2 antisense RNA 1
Ensembl Gene ID: ENSG00000261080
Ensembl Transcript ID: ENST00000563807
Location (hg38): chr6:45573346-45576770
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1513 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563807.1; RP1-166H4.2-001; OTTHUMT00000431271.1; NONHSAT147409
Alternative gene names: ENSG00000261080.1; RP1-166H4.2; OTTHUMG00000175917.1; RUNX2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.939 non-coding 
CPAT coding probability 16.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RUNX2-AS1:24 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SUPT3H-1:4
4.0 lnc-SUPT3H-1:4
4.1 lnc-SUPT3H-1:4
5.0 lnc-SUPT3H-1:4
5.1 RUNX2-AS1:8
5.2 RUNX2-AS1:24