Transcript: RXYLT1-AS1:4

Basic information

LNCipedia transcript ID: RXYLT1-AS1:4 
HGNC Gene Symbol: RXYLT1-AS1    
HGNC Full Gene Name: RXYLT1 antisense RNA 1
Ensembl Gene ID: ENSG00000255850
Ensembl Transcript ID: ENST00000546214
RefSeq ID: NR_126167
Location (hg38): chr12:63808845-63822156
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 563 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000546214.1; RP11-415I12.5-001; OTTHUMT00000400829.1; NONHSAT029121; NR_126167; NR_126167.1
Alternative gene names: ENSG00000255850.1; RP11-415I12.5; OTTHUMG00000168731.1; TMEM5-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.084 non-coding 
CPAT coding probability 4.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RXYLT1-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DPY19L2-2:1
4.0 TMEM5-AS1:1
4.1 TMEM5-AS1:1
5.0 TMEM5-AS1:1
5.1 RXYLT1-AS1:2
5.2 RXYLT1-AS1:4