Transcript: SALRNA1:8

Basic information

LNCipedia transcript ID: SALRNA1:8 
LNCipedia gene ID: SALRNA1
Location (hg38): chr14:60640730-60642589
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000555871.1; RP11-1042B17.5-001; OTTHUMT00000412196.1; NONHSAT037226
Alternative gene names: ENSG00000258952.1; RP11-1042B17.5; OTTHUMG00000171189.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -287.0162 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SALRNA1:8 no no no no

Available literature

  1. Abdelmohsen (2013), Senescence-associated lncRNAs: senescence-associated long noncoding RNAs., Aging Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MNAT1-3:1
4.0 lnc-MNAT1-6:4
4.1 lnc-MNAT1-6:4
5.0 lnc-MNAT1-6:4
5.1 SALRNA1:5
5.2 SALRNA1:8