Transcript: SAP30L-AS1:6

Basic information

LNCipedia transcript ID: SAP30L-AS1:6 
HGNC Gene Symbol: SAP30L-AS1    
HGNC Full Gene Name: SAP30L antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000245275
Ensembl Transcript ID: ENST00000524264
Location (hg38): chr5:154392171-154445813
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1039 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524264; ENST00000524264.1; CTB-157D17.1-002; OTTHUMT00000374279.1; ENST00000524264.5
Alternative gene names: ENSG00000245275; CTB-157D17.1; ENSG00000245275.2; OTTHUMG00000163570.1; ENSG00000245275.3; SAP30L-AS1; ENSG00000245275.7; FLJ38109; GALNT10-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.5909 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAP30L-AS1:6 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HAND1-2:4
3.1 lnc-HAND1-2:4
4.0 SAP30L-AS1:6
4.1 SAP30L-AS1:6
5.0 SAP30L-AS1:6
5.1 SAP30L-AS1:6
5.2 SAP30L-AS1:6