Transcript: SAPCD1-AS1:1

Basic information

LNCipedia transcript ID: SAPCD1-AS1:1 
HGNC Gene Symbol: SAPCD1-AS1    
HGNC Full Gene Name: SAPCD1 antisense RNA 1
Ensembl Gene ID: ENSG00000235663
Ensembl Transcript ID: ENST00000419679
Location (hg38): chr6:31764310-31765588
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 461 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419679.1; SAPCD1-AS1-001; OTTHUMT00000268184.1; NONHSAT108832
Alternative gene names: ENSG00000235663.1; SAPCD1-AS1; OTTHUMG00000137389.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -277.4079 non-coding 
CPAT coding probability 6.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAPCD1-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VWA7-1:1
4.0 SAPCD1-AS1:1
4.1 SAPCD1-AS1:1
5.0 SAPCD1-AS1:1
5.1 SAPCD1-AS1:1
5.2 SAPCD1-AS1:1