Transcript: SATB2-AS1:17

Basic information

LNCipedia transcript ID: SATB2-AS1:17 
LNCipedia gene ID: SATB2-AS1
Location (hg38): chr2:199468098-199472945
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4848 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225953.2|MICT00000205506.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -36.1103 non-coding 
CPAT coding probability 26.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SATB2-AS1:17 no no no no

Available literature

  1. Liu (2017), A novel antisense long non-coding RNA SATB2-AS1 overexpresses in osteosarcoma and increases cell proliferation and growth., Mol. Cell. Biochem.
  2. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  3. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SATB2-AS1:17
5.0 SATB2-AS1:17
5.1 SATB2-AS1:17
5.2 SATB2-AS1:17