Transcript: SATB2-AS1:6

Basic information

LNCipedia transcript ID: SATB2-AS1:6 
LNCipedia gene ID: SATB2-AS1
RefSeq ID: NR_026830
Location (hg38): chr2:199468098-199472758
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3316 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT076256; NR_026830; NR_026830.1
Alternative gene names: ; SATB2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.3767 non-coding 
CPAT coding probability 42.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SATB2-AS1:6 no no no no

Available literature

  1. Liu (2017), A novel antisense long non-coding RNA SATB2-AS1 overexpresses in osteosarcoma and increases cell proliferation and growth., Mol. Cell. Biochem.
  2. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  3. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C2orf69-3:7
4.0 SATB2-AS1:6
4.1 SATB2-AS1:6
5.0 SATB2-AS1:6
5.1 SATB2-AS1:6
5.2 SATB2-AS1:6