Transcript: SATB2-AS1:9

Basic information

LNCipedia transcript ID: SATB2-AS1:9 
LNCipedia gene ID: SATB2-AS1
Location (hg38): chr2:199472705-199473178
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 474 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT076259; FPKM1_group_18103_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.1826 non-coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SATB2-AS1:9 no no no no

Available literature

  1. Liu (2017), A novel antisense long non-coding RNA SATB2-AS1 overexpresses in osteosarcoma and increases cell proliferation and growth., Mol. Cell. Biochem.
  2. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  3. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C2orf69-3:8
4.0 SATB2-AS1:9
4.1 SATB2-AS1:9
5.0 SATB2-AS1:9
5.1 SATB2-AS1:9
5.2 SATB2-AS1:9