Transcript: SCAMP1-AS1:3

Basic information

LNCipedia transcript ID: SCAMP1-AS1:3 
LNCipedia gene ID: SCAMP1-AS1
Location (hg38): chr5:78355550-78360514
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 4737 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT102316
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.6985 non-coding 
CPAT coding probability 7.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCAMP1-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP3B1-2:5
4.0 SCAMP1-AS1:3
4.1 SCAMP1-AS1:3
5.0 SCAMP1-AS1:3
5.1 SCAMP1-AS1:3
5.2 SCAMP1-AS1:3