Transcript: SCAMP1-AS1:4

Basic information

LNCipedia transcript ID: SCAMP1-AS1:4 
HGNC Gene Symbol: SCAMP1-AS1    
HGNC Full Gene Name: SCAMP1 antisense RNA 1
Ensembl Gene ID: ENSG00000245556
Ensembl Transcript ID: ENST00000421004
Location (hg38): chr5:78358801-78360507
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1479 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421004; ENST00000421004.3; CTD-2037K23.2-001; OTTHUMT00000369105.1
Alternative gene names: ENSG00000245556; CTD-2037K23.2; ENSG00000245556.2; OTTHUMG00000162481.1; SCAMP1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.191 non-coding 
CPAT coding probability 3.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCAMP1-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP3B1-2:1
3.1 lnc-AP3B1-2:1
4.0 SCAMP1-AS1:4
4.1 SCAMP1-AS1:4
5.0 SCAMP1-AS1:4
5.1 SCAMP1-AS1:4
5.2 SCAMP1-AS1:4