Transcript: SCEL-AS1:2

Basic information

LNCipedia transcript ID: SCEL-AS1:2 
HGNC Gene Symbol: SCEL-AS1    
HGNC Full Gene Name: SCEL antisense RNA 1
Ensembl Gene ID: ENSG00000224347
Ensembl Transcript ID: ENST00000457528
RefSeq ID: NR_126413
Location (hg38): chr13:77599755-77606551
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 450 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT034415; ENST00000457528.2; ENST00000457528.6; NR_126413.1
Alternative gene names: ENSG00000224347.2; SCEL-AS1; ENSG00000224347.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -319.4541 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCEL-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYCBP2-1:3
4.0 SCEL-AS1:2
4.1 SCEL-AS1:2
5.0 SCEL-AS1:2
5.1 SCEL-AS1:2
5.2 SCEL-AS1:2