Transcript: SCHLAP1:11

Basic information

LNCipedia transcript ID: SCHLAP1:11 
LNCipedia gene ID: SCHLAP1
Location (hg38): chr2:180897766-180921247
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 12314 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT075852; FPKM1_group_17782_transcript_8
Alternative gene names: SChLAP1; PCAT11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.7053 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCHLAP1:11 no no no no

Available literature

  1. Lee (2013), Linking the SWI/SNF complex to prostate cancer., Nat. Genet.
  2. Prensner (2013), The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBE2E3-2:11
4.0 SCHLAP1:11
4.1 SCHLAP1:11
5.0 SCHLAP1:11
5.1 SCHLAP1:11
5.2 SCHLAP1:11