Transcript: SCOC-AS1:11

Basic information

LNCipedia transcript ID: SCOC-AS1:11 
LNCipedia gene ID: SCOC-AS1
Location (hg38): chr4:140360812-140373403
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 454 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000196951.6|ENST00000609616.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -34.1818 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCOC-AS1:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SCOC-AS1:11
5.0 SCOC-AS1:11
5.1 SCOC-AS1:11
5.2 SCOC-AS1:11