Transcript: SDCBP2-AS1:1

Basic information

LNCipedia transcript ID: SDCBP2-AS1:1 
LNCipedia gene ID: SDCBP2-AS1
Location (hg38): chr20:1273410-1326734
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 2158 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002wex_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -38.5811 non-coding 
CPAT coding probability 6.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SDCBP2-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNPH-2:2
4.0 SDCBP2-AS1:1
4.1 SDCBP2-AS1:1
5.0 SDCBP2-AS1:1
5.1 SDCBP2-AS1:1
5.2 SDCBP2-AS1:1