Transcript: SDCBP2-AS1:12

Basic information

LNCipedia transcript ID: SDCBP2-AS1:12 
LNCipedia gene ID: SDCBP2-AS1
Ensembl Gene ID: ENSG00000229728
Ensembl Transcript ID: ENST00000412497
Location (hg38): chr20:1361622-1362585
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 480 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412497.1; RP11-314N13.3-001; OTTHUMT00000077517.1; NONHSAT078103
Alternative gene names: ENSG00000229728.1; RP11-314N13.3; OTTHUMG00000031663.1; ; AL136531.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.0503 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SDCBP2-AS1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNPH-1:1
4.0 SDCBP2-AS1:12
4.1 SDCBP2-AS1:12
5.0 SDCBP2-AS1:12
5.1 SDCBP2-AS1:12
5.2 SDCBP2-AS1:12