Transcript: SDCBP2-AS1:9

Basic information

LNCipedia transcript ID: SDCBP2-AS1:9 
HGNC Gene Symbol: SDCBP2-AS1    
HGNC Full Gene Name: SDCBP2 antisense RNA 1
Ensembl Gene ID: ENSG00000234684
Ensembl Transcript ID: ENST00000446423
Location (hg38): chr20:1325421-1378183
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1811 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446423; ENST00000446423.1; FKBP1A-SDCBP2-001; OTTHUMT00000077548.1
Alternative gene names: ENSG00000234684; FKBP1A-SDCBP2; ENSG00000234684.1; OTTHUMG00000031671.1; ENSG00000234684.2; SDCBP2-AS1; ENSG00000234684.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -81.1704 non-coding 
CPAT coding probability 4.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SDCBP2-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNPH-1:1
3.1 lnc-SNPH-2:1
4.0 SDCBP2-AS1:9
4.1 SDCBP2-AS1:9
5.0 SDCBP2-AS1:9
5.1 SDCBP2-AS1:9
5.2 SDCBP2-AS1:9