Transcript: SEMA3B-AS1:4

Basic information

LNCipedia transcript ID: SEMA3B-AS1:4 
HGNC Gene Symbol: SEMA3B-AS1    
HGNC Full Gene Name: SEMA3B antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000232352
Ensembl Transcript ID: ENST00000421735
RefSeq ID: NR_110702
Location (hg38): chr3:50266641-50267371
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 338 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005774; ENST00000421735.1; U73167.7-001; OTTHUMT00000346773.1; NR_110702; NR_110702.1
Alternative gene names: XLOC_003123; linc-MON1A-2; ENSG00000232352.1; U73167.7; OTTHUMG00000156955.1; SEMA3B-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.7354 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SEMA3B-AS1:4 no no no no

Available literature

  1. Wang (2016), Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells., Stem Cells Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFRD2-1:2
3.1 lnc-IFRD2-1:2
4.0 SEMA3B-AS1:4
4.1 SEMA3B-AS1:4
5.0 SEMA3B-AS1:4
5.1 SEMA3B-AS1:4
5.2 SEMA3B-AS1:4