Transcript: SEMA3F-AS1:2

Basic information

LNCipedia transcript ID: SEMA3F-AS1:2 
HGNC Gene Symbol: SEMA3F-AS1    
HGNC Full Gene Name: SEMA3F antisense RNA 1
Ensembl Gene ID: ENSG00000235016
Ensembl Transcript ID: ENST00000425674
Location (hg38): chr3:50118165-50156020
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 565 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425674.1; RP11-493K19.3-002; OTTHUMT00000345842.1; NONHSAT089788
Alternative gene names: ENSG00000235016.1; RP11-493K19.3; OTTHUMG00000156795.1; SEMA3F-AS1; RBM5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.0412 non-coding 
CPAT coding probability 8.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SEMA3F-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IFRD2-2:2
4.0 SEMA3F-AS1:2
4.1 SEMA3F-AS1:2
5.0 SEMA3F-AS1:2
5.1 SEMA3F-AS1:2
5.2 SEMA3F-AS1:2