Transcript: SENCR:1

Basic information

LNCipedia transcript ID: SENCR:1 
LNCipedia gene ID: SENCR
Location (hg38): chr11:128691680-128696023
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1290 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000526269.1; RP11-744N12.2-001; OTTHUMT00000386230.1
Alternative gene names: ENSG00000254703.1; RP11-744N12.2; OTTHUMG00000165793.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -266.8477 non-coding 
CPAT coding probability 7.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SENCR:1 yes no no no

Available literature

  1. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  2. Bell (2014), Identification and initial functional characterization of a human vascular cell-enriched long noncoding RNA., Arterioscler. Thromb. Vasc. Biol.
  3. Thum (2014), The smooth long noncoding RNA SENCR., Arterioscler. Thromb. Vasc. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-744N12.3.1-1:1
4.0 SENCR:1
4.1 SENCR:1
5.0 SENCR:1
5.1 SENCR:1
5.2 SENCR:1