Transcript: SENCR:2

Basic information

LNCipedia transcript ID: SENCR:2 
HGNC Gene Symbol: SENCR    
HGNC Full Gene Name: smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA
Ensembl Gene ID: ENSG00000254703
Ensembl Transcript ID: ENST00000526269
RefSeq ID: NR_038908
Location (hg38): chr11:128691672-128696023
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1298 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT025072; NR_038908; ENST00000526269.2; NR_038908.1
Alternative gene names: ENSG00000254703.2; SENCR;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -266.8477 non-coding 
CPAT coding probability 7.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SENCR:2 yes no no no

Available literature

  1. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  2. Bell (2014), Identification and initial functional characterization of a human vascular cell-enriched long noncoding RNA., Arterioscler. Thromb. Vasc. Biol.
  3. Thum (2014), The smooth long noncoding RNA SENCR., Arterioscler. Thromb. Vasc. Biol.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-744N12.3.1-1:2
4.0 SENCR:2
4.1 SENCR:2
5.0 SENCR:2
5.1 SENCR:2
5.2 SENCR:2