Transcript: SGMS1-AS1:1

Basic information

LNCipedia transcript ID: SGMS1-AS1:1 
LNCipedia gene ID: SGMS1-AS1
Location (hg38): chr10:50623979-50626863
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2885 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT013388
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.1398 non-coding 
CPAT coding probability 63.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SGMS1-AS1:1 no no no no

Available literature

  1. Lin (2014), Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs., Transl Neurodegener


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASAH2B-2:2
4.0 SGMS1-AS1:1
4.1 SGMS1-AS1:1
5.0 SGMS1-AS1:1
5.1 SGMS1-AS1:1
5.2 SGMS1-AS1:1