Transcript: SGMS1-AS1:2

Basic information

LNCipedia transcript ID: SGMS1-AS1:2 
HGNC Gene Symbol: SGMS1-AS1    
HGNC Full Gene Name: SGMS1 antisense RNA 1
Ensembl Gene ID: ENSG00000226200
Ensembl Transcript ID: ENST00000443374
Location (hg38): chr10:50624951-50641451
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 12400 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443374.2; ENST00000443374.6
Alternative gene names: ENSG00000226200.2; RP11-50E11.3; ENSG00000226200.6; SGMS1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.954 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGMS1-AS1:2 no no no no

Available literature

  1. Lin (2014), Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs., Transl Neurodegener


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASAH2B-2:3
4.0 SGMS1-AS1:2
4.1 SGMS1-AS1:2
5.0 SGMS1-AS1:2
5.1 SGMS1-AS1:2
5.2 SGMS1-AS1:2