Transcript: SGMS1-AS1:5

Basic information

LNCipedia transcript ID: SGMS1-AS1:5 
LNCipedia gene ID: SGMS1-AS1
Location (hg38): chr10:50627023-50629259
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 993 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT013389; FPKM1_group_3327_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.7504 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGMS1-AS1:5 no no no no

Available literature

  1. Lin (2014), Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs., Transl Neurodegener


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASAH2B-2:5
4.0 SGMS1-AS1:5
4.1 SGMS1-AS1:5
5.0 SGMS1-AS1:5
5.1 SGMS1-AS1:5
5.2 SGMS1-AS1:5