Transcript: SGMS1-AS1:6

Basic information

LNCipedia transcript ID: SGMS1-AS1:6 
LNCipedia gene ID: SGMS1-AS1
Location (hg38): chr10:50629150-50631636
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2089 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000443374.1; RP11-50E11.3-001; OTTHUMT00000048071.1; NONHSAT013390
Alternative gene names: ENSG00000226200.1; RP11-50E11.3; OTTHUMG00000018230.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.954 non-coding 
CPAT coding probability 8.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGMS1-AS1:6 no no no no

Available literature

  1. Lin (2014), Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs., Transl Neurodegener


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASAH2B-2:1
4.0 SGMS1-AS1:6
4.1 SGMS1-AS1:6
5.0 SGMS1-AS1:6
5.1 SGMS1-AS1:6
5.2 SGMS1-AS1:6