Transcript: SGO1-AS1:3

Basic information

LNCipedia transcript ID: SGO1-AS1:3 
LNCipedia gene ID: SGO1-AS1
Location (hg38): chr3:20186234-20189356
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3123 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT088617
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.2769 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGO1-AS1:3 no no no no

Available literature

  1. Li (2015), Genome-Wide Analysis of Long Noncoding RNA Expression Profiles in Human Xuanwei Lung Cancer., Clin. Lab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KAT2B-1:3
4.0 SGO1-AS1:3
4.1 SGO1-AS1:3
5.0 SGO1-AS1:3
5.1 SGO1-AS1:3
5.2 SGO1-AS1:3