Transcript: SGO1-AS1:6

Basic information

LNCipedia transcript ID: SGO1-AS1:6 
HGNC Gene Symbol: SGO1-AS1    
HGNC Full Gene Name: SGO1 antisense RNA 1
Ensembl Gene ID: ENSG00000231304
Ensembl Transcript ID: ENST00000455626
RefSeq ID: NR_110814
Location (hg38): chr3:20342468-20350928
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2041 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005498; ENST00000455626; ENST00000455626.1; AC107622.1-001; OTTHUMT00000340540.1; NONHSAT088621; NR_110814; NR_110814.1
Alternative gene names: XLOC_002595; linc-UBE2E2-2; ENSG00000231304; AC107622.1; ENSG00000231304.1; OTTHUMG00000155533.1; ENSG00000231304.2; SGOL1-AS1; ; SGO1-AS1; LOC101927829


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.3263 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGO1-AS1:6 no no no no

Available literature

  1. Li (2015), Genome-Wide Analysis of Long Noncoding RNA Expression Profiles in Human Xuanwei Lung Cancer., Clin. Lab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KAT2B-1:1
3.1 lnc-KAT2B-2:1
4.0 SGO1-AS1:6
4.1 SGO1-AS1:6
5.0 SGO1-AS1:6
5.1 SGO1-AS1:6
5.2 SGO1-AS1:6