Transcript: SH3TC2-DT:42

Basic information

LNCipedia transcript ID: SH3TC2-DT:42 
LNCipedia gene ID: SH3TC2-DT
Location (hg38): chr5:149063557-149066985
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3037 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250072.1|ENST00000507318.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -20.1564 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SH3TC2-DT:42 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ABLIM3-1:18
5.0 lnc-ABLIM3-1:18
5.1 SH3TC2-DT:17
5.2 SH3TC2-DT:42