Transcript: SH3TC2-DT:47

Basic information

LNCipedia transcript ID: SH3TC2-DT:47 
LNCipedia gene ID: SH3TC2-DT
Location (hg38): chr5:149063557-149089804
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 842 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250072.1|FTMT21900029644.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -22.9689 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SH3TC2-DT:47 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ABLIM3-1:24
5.0 lnc-ABLIM3-1:24
5.1 SH3TC2-DT:22
5.2 SH3TC2-DT:47