Transcript: SHANK2-AS2:1

Basic information

LNCipedia transcript ID: SHANK2-AS2:1 
HGNC Gene Symbol: SHANK2-AS2    
HGNC Full Gene Name: SHANK2 antisense RNA 2
Ensembl Gene ID: ENSG00000236262
Ensembl Transcript ID: ENST00000429268
Location (hg38): chr11:70646165-70647562
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 356 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429268.1; SHANK2-AS2-001; OTTHUMT00000327644.1; NONHSAT022669
Alternative gene names: ENSG00000236262.1; SHANK2-AS2; OTTHUMG00000152738.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.7542 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SHANK2-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTTN-3:1
4.0 SHANK2-AS2:1
4.1 SHANK2-AS2:1
5.0 SHANK2-AS2:1
5.1 SHANK2-AS2:1
5.2 SHANK2-AS2:1