Transcript: SIX3-AS1:10

Basic information

LNCipedia transcript ID: SIX3-AS1:10 
LNCipedia gene ID: SIX3-AS1
Location (hg38): chr2:44940262-44941487
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 984 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236502.1|FTMT20500072733.1
Alternative gene names: SIX3OS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -55.9215 non-coding 
CPAT coding probability 7.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SIX3-AS1:10 no no no no

Available literature

  1. Alfano (2005), Natural antisense transcripts associated with genes involved in eye development., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SIX3-AS1:10
5.0 SIX3-AS1:10
5.1 SIX3-AS1:10
5.2 SIX3-AS1:10