Transcript: SIX3-AS1:4

Basic information

LNCipedia transcript ID: SIX3-AS1:4 
LNCipedia gene ID: SIX3-AS1
RefSeq ID: NR_103786
Location (hg38): chr2:44940154-44941878
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 849 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_103786; NR_103786.1
Alternative gene names: ; SIX3OS; SIX3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.483 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SIX3-AS1:4 no no no no

Available literature

  1. Alfano (2005), Natural antisense transcripts associated with genes involved in eye development., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIX2-2:6
4.0 SIX3-AS1:4
4.1 SIX3-AS1:4
5.0 SIX3-AS1:4
5.1 SIX3-AS1:4
5.2 SIX3-AS1:4