Transcript: SIX3-AS1:6

Basic information

LNCipedia transcript ID: SIX3-AS1:6 
LNCipedia gene ID: SIX3-AS1
RefSeq ID: NR_103785
Location (hg38): chr2:44940154-44941507
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1000 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT070436; NR_103785; NR_103785.1
Alternative gene names: ; SIX3OS; SIX3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.483 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SIX3-AS1:6 no no no no

Available literature

  1. Alfano (2005), Natural antisense transcripts associated with genes involved in eye development., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIX2-2:7
4.0 SIX3-AS1:6
4.1 SIX3-AS1:6
5.0 SIX3-AS1:6
5.1 SIX3-AS1:6
5.2 SIX3-AS1:6