Transcript: SKAP1-AS1:3

Basic information

LNCipedia transcript ID: SKAP1-AS1:3 
HGNC Gene Symbol: SKAP1-AS1    
HGNC Full Gene Name: SKAP1 antisense RNA 1
Ensembl Gene ID: ENSG00000263787
Ensembl Transcript ID: ENST00000582246
Location (hg38): chr17:48185938-48204529
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 687 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582246.1; RP11-456D7.1-001; OTTHUMT00000443441.1; NONHSAT054390
Alternative gene names: ENSG00000263787.1; RP11-456D7.1; OTTHUMG00000178825.1; SKAP1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.6076 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SKAP1-AS1:3 no no no no

Available literature

  1. Huang (2016), Identification of Potential Key Long Non-Coding RNAs and Target Genes Associated with Pneumonia Using Long Non-Coding RNA Sequencing (lncRNA-Seq): A Preliminary Study., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX11-1:1
4.0 lnc-SNX11-1:1
4.1 lnc-SNX11-1:1
5.0 lnc-SNX11-1:1
5.1 SKAP1-AS1:2
5.2 SKAP1-AS1:3