Transcript: SLC12A5-AS1:5

Basic information

LNCipedia transcript ID: SLC12A5-AS1:5 
LNCipedia gene ID: SLC12A5-AS1
Location (hg38): chr20:46013502-46022073
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1955 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000535913.1; RP11-465L10.10-201; NONHSAT079994
Alternative gene names: ENSG00000204044.5; RP11-465L10.10; OTTHUMG00000032629.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.8361 non-coding 
CPAT coding probability 39.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SLC12A5-AS1:5 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NCOA5-1:1
4.0 lnc-NCOA5-1:1
4.1 lnc-NCOA5-1:1
5.0 lnc-NCOA5-1:1
5.1 SLC12A5-AS1:2
5.2 SLC12A5-AS1:5