Transcript: SLC16A1-AS1:15

Basic information

LNCipedia transcript ID: SLC16A1-AS1:15 
LNCipedia gene ID: SLC16A1-AS1
Location (hg38): chr1:112961902-112975288
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1341 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000513058
Alternative gene names: ENSG00000250717; ; ENST00000421157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.8041 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC16A1-AS1:15 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRIG2-3:1
3.1 lnc-LRIG2-3:1
4.0 SLC16A1-AS1:15
4.1 SLC16A1-AS1:15
5.0 SLC16A1-AS1:15
5.1 SLC16A1-AS1:15
5.2 SLC16A1-AS1:15