Transcript: SLC16A1-AS1:19

Basic information

LNCipedia transcript ID: SLC16A1-AS1:19 
LNCipedia gene ID: SLC16A1-AS1
Location (hg38): chr1:113046052-113047052
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1001 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT005313; FPKM1_group_1266_transcript_1
Alternative gene names: ; ENST00000421157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.547 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC16A1-AS1:19 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRIG2-2:3
4.0 SLC16A1-AS1:19
4.1 SLC16A1-AS1:19
5.0 SLC16A1-AS1:19
5.1 SLC16A1-AS1:19
5.2 SLC16A1-AS1:19