Transcript: SLC16A1-AS1:20

Basic information

LNCipedia transcript ID: SLC16A1-AS1:20 
LNCipedia gene ID: SLC16A1-AS1
Location (hg38): chr1:112956461-112964036
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1077 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226419.2|HBMT00000025415.1
Alternative gene names: ENST00000421157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.4593 non-coding 
CPAT coding probability 13.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC16A1-AS1:20 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SLC16A1-AS1:20
5.0 SLC16A1-AS1:20
5.1 SLC16A1-AS1:20
5.2 SLC16A1-AS1:20