Transcript: SLC16A1-AS1:30

Basic information

LNCipedia transcript ID: SLC16A1-AS1:30 
LNCipedia gene ID: SLC16A1-AS1
RefSeq ID: NR_103743
Location (hg38): chr1:112956415-112964072
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1508 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_103743.1
Alternative gene names: SLC16A1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.1941 non-coding 
CPAT coding probability 12.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC16A1-AS1:30 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 SLC16A1-AS1:30
5.1 SLC16A1-AS1:30
5.2 SLC16A1-AS1:30