Transcript: SLC16A1-AS1:5

Basic information

LNCipedia transcript ID: SLC16A1-AS1:5 
LNCipedia gene ID: SLC16A1-AS1
Location (hg38): chr1:112956429-113002191
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1747 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435800; ENST00000435800.1; RP11-31F15.1-001; OTTHUMT00000033535.1; NONHSAT005300
Alternative gene names: ENSG00000226419; RP11-31F15.1; ENSG00000226419.1; OTTHUMG00000012128.1; ; ENST00000421157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.2112 non-coding 
CPAT coding probability 18.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC16A1-AS1:5 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRIG2-4:2
3.1 lnc-LRIG2-4:2
4.0 SLC16A1-AS1:5
4.1 SLC16A1-AS1:5
5.0 SLC16A1-AS1:5
5.1 SLC16A1-AS1:5
5.2 SLC16A1-AS1:5