Transcript: SLC16A1-AS1:7

Basic information

LNCipedia transcript ID: SLC16A1-AS1:7 
LNCipedia gene ID: SLC16A1-AS1
Location (hg38): chr1:112956461-112968987
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2314 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000428411; ENST00000428411.1; RP11-31F15.1-003; OTTHUMT00000033537.1; NONHSAT005301
Alternative gene names: ENSG00000226419; RP11-31F15.1; ENSG00000226419.1; OTTHUMG00000012128.1; ENSG00000226419.2; SLC16A1-AS1; ; ENST00000421157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.2112 non-coding 
CPAT coding probability 18.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC16A1-AS1:7 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRIG2-4:3
3.1 lnc-LRIG2-4:3
4.0 SLC16A1-AS1:7
4.1 SLC16A1-AS1:7
5.0 SLC16A1-AS1:7
5.1 SLC16A1-AS1:7
5.2 SLC16A1-AS1:7