Transcript: SLC25A5-AS1:2

Basic information

LNCipedia transcript ID: SLC25A5-AS1:2 
HGNC Gene Symbol: SLC25A5-AS1    
HGNC Full Gene Name: SLC25A5 antisense RNA 1
Ensembl Gene ID: ENSG00000224281
Ensembl Transcript ID: ENST00000445759
RefSeq ID: NR_134914
Location (hg38): chrX:119466424-119469098
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1616 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445759; ENST00000445759.1; SLC25A5-AS1-001; OTTHUMT00000058033.1; NR_134914.1
Alternative gene names: ENSG00000224281; RP3-404F18.2; ENSG00000224281.3; SLC25A5-AS1; OTTHUMG00000022273.1; ENSG00000224281.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.0253 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC25A5-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXorf56-1:1
3.1 lnc-CXorf56-1:1
4.0 SLC25A5-AS1:2
4.1 SLC25A5-AS1:2
5.0 SLC25A5-AS1:2
5.1 SLC25A5-AS1:2
5.2 SLC25A5-AS1:2