Transcript: SLC2A1-AS1:1

Basic information

LNCipedia transcript ID: SLC2A1-AS1:1 
HGNC Gene Symbol: SLC2A1-AS1    
HGNC Full Gene Name: SLC2A1 antisense RNA 1
Ensembl Gene ID: ENSG00000227533
Ensembl Transcript ID: ENST00000431759
RefSeq ID: NR_033967
Location (hg38): chr1:42959049-42983358
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1124 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000431759; ENST00000431759.1; RP5-848E13.3-002; OTTHUMT00000020688.1; NONHSAT002769; NR_033967; ENST00000431759.5; NR_033967.1
Alternative gene names: ENSG00000227533; RP5-848E13.3; ENSG00000227533.1; OTTHUMG00000007699.1; SLC2A1-AS1; ENSG00000227533.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.8888 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC2A1-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF691-1:1
3.1 lnc-ZNF691-1:1
4.0 SLC2A1-AS1:1
4.1 SLC2A1-AS1:1
5.0 SLC2A1-AS1:1
5.1 SLC2A1-AS1:1
5.2 SLC2A1-AS1:1