Transcript: SLC2A1-AS1:2

Basic information

LNCipedia transcript ID: SLC2A1-AS1:2 
HGNC Gene Symbol: SLC2A1-AS1    
HGNC Full Gene Name: SLC2A1 antisense RNA 1
Ensembl Gene ID: ENSG00000227533
Ensembl Transcript ID: ENST00000416689
Location (hg38): chr1:42959104-42976428
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3075 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416689; ENST00000416689.1; RP5-848E13.3-001; OTTHUMT00000020687.1; NONHSAT002771
Alternative gene names: ENSG00000227533; RP5-848E13.3; ENSG00000227533.1; OTTHUMG00000007699.1; SLC2A1-AS1; ENSG00000227533.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.5604 non-coding 
CPAT coding probability 4.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC2A1-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF691-1:2
3.1 lnc-ZNF691-1:2
4.0 SLC2A1-AS1:2
4.1 SLC2A1-AS1:2
5.0 SLC2A1-AS1:2
5.1 SLC2A1-AS1:2
5.2 SLC2A1-AS1:2