Transcript: SLC39A12-AS1:2

Basic information

LNCipedia transcript ID: SLC39A12-AS1:2 
HGNC Gene Symbol: SLC39A12-AS1    
HGNC Full Gene Name: SLC39A12 antisense RNA 1
Ensembl Gene ID: ENSG00000226083
Ensembl Transcript ID: ENST00000445287
Location (hg38): chr10:18003104-18007270
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1006 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445287.1; RP11-110H10.2-002; OTTHUMT00000047059.1; NONHSAT011634
Alternative gene names: ENSG00000226083.1; RP11-110H10.2; OTTHUMG00000017758.1; SLC39A12-AS1; ENSG00000226083.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.6557 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC39A12-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NSUN6-5:2
4.0 SLC39A12-AS1:2
4.1 SLC39A12-AS1:2
5.0 SLC39A12-AS1:2
5.1 SLC39A12-AS1:2
5.2 SLC39A12-AS1:2