Transcript: SLC5A4-AS1:7

Basic information

LNCipedia transcript ID: SLC5A4-AS1:7 
LNCipedia gene ID: SLC5A4-AS1
Location (hg38): chr22:32205167-32269666
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 824 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000242082.1|ENST00000434942.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.9438 non-coding 
CPAT coding probability 8.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC5A4-AS1:7 yes no no no

Available literature

  1. Ren (2016), A Tumor-Specific Prognostic Long Non-Coding RNA Signature in Gastric Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RFPL3-3:3
5.0 lnc-RFPL3-3:3
5.1 SLC5A4-AS1:4
5.2 SLC5A4-AS1:7