Transcript: SLC8A1-AS1:15

Basic information

LNCipedia transcript ID: SLC8A1-AS1:15 
HGNC Gene Symbol: SLC8A1-AS1    
HGNC Full Gene Name: SLC8A1 antisense RNA 1
Ensembl Gene ID: ENSG00000227028
Ensembl Transcript ID: ENST00000625234
Location (hg38): chr2:40065358-40251729
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 700 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625234.2
Alternative gene names: ENSG00000227028.6; SLC8A1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -166.289 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC8A1-AS1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SLC8A1-AS1:15
4.1 SLC8A1-AS1:15
5.0 SLC8A1-AS1:15
5.1 SLC8A1-AS1:15
5.2 SLC8A1-AS1:15