Transcript: SLC8A1-AS1:3

Basic information

LNCipedia transcript ID: SLC8A1-AS1:3 
HGNC Gene Symbol: SLC8A1-AS1    
HGNC Full Gene Name: SLC8A1 antisense RNA 1
Ensembl Gene ID: ENSG00000227028
Ensembl Transcript ID: ENST00000631142
Location (hg38): chr2:39851307-40251729
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 623 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000631142.2
Alternative gene names: ENSG00000227028.6; SLC8A1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -166.6396 non-coding 
CPAT coding probability 3.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC8A1-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SLC8A1-AS1:3
4.1 SLC8A1-AS1:3
5.0 SLC8A1-AS1:3
5.1 SLC8A1-AS1:3
5.2 SLC8A1-AS1:3