Transcript: SLIT2-IT1:1

Basic information

LNCipedia transcript ID: SLIT2-IT1:1 
HGNC Gene Symbol: SLIT2-IT1    
HGNC Full Gene Name: SLIT2 intronic transcript 1
Ensembl Gene ID: ENSG00000248228
Ensembl Transcript ID: ENST00000515882
RefSeq ID: NR_037876
Location (hg38): chr4:20392189-20394856
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 601 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000515882.1; SLIT2-IT1-001; OTTHUMT00000359840.1; NONHSAT095731; NR_037876; NR_037876.2
Alternative gene names: ENSG00000248228.1; SLIT2-IT1; OTTHUMG00000160239.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -201.4523 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLIT2-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PACRGL-1:1
4.0 SLIT2-IT1:1
4.1 SLIT2-IT1:1
5.0 SLIT2-IT1:1
5.1 SLIT2-IT1:1
5.2 SLIT2-IT1:1